Education
2019 - Current
M.S. Ph.D. Integrated
Sungkyunkwan University
2016 - 2019
Bachelor of Science
Sungkyunkwan University
Research Interests
Computational Biophysics, Molecular Dynamics Simulation, Bioinformatics, Protein Structure Prediction, Protein-Protein Interaction, Parallel Computing
Academic Positions
Korea Institute for Advanced Study
Research Assistant
2022 - Current
Honors and Awards
Apr 2025
Outstanding Presentation Award
2025 Korean Physical Society (KPS) Spring Meeting
DeepFold-PLM: Accelerating Protein Structure Prediction with Optimized Homolog Detection and Protein Language Models
Conference Presentations
Publications
-
DeepFold-PLM: Accelerating Protein Structure Prediction via Efficient Homology Search Using Protein Language Models Bioinformatics ??(??) btaf579, 2025. DOI: 10.1093/bioinformatics/btaf579
Kim, Minsoo; Bae, Hanjin; Jo, Gyeongpil; Kim, Kunwoo; Lee, Sung Jong; Yoo, Jejoong; Joo, Keehyoung.
-
Web-based applications for automated generation of functionalized graphene and carbon nanotube for molecular dynamics simulations and automated three-dimensional analysis of ion flow through nanopores. Current Applied Physics 67 30-37, 2024. DOI: 10.1016/j.cap.2024.07.011
Jo, Gyeongpil; Kim, Minsoo; Lee, Jinmin; Lee, Sang Hak; Yoo, Jejoong.
-
DeepFold: Enhancing Protein Structure Prediction through Optimized Loss Functions, Improved Template Features, and Re-optimized Energy Function. Bioinformatics 39(12) btad712, 2023. DOI: 10.1093/bioinformatics/btad712
Lee, Jae-Won; Won, Jong-Hyun; Jeon, Seonggwang; Choo, Yujin; Yeon, Yubin; Oh, Jin-Seon; Kim, Minsoo; Kim, SeonHwa; Joung, InSuk; Jang, Cheongjae; Lee, Sung Jong; Kim, Tae Hyun; Jin, Kyong Hwan; Song, Giltae; Kim, Eun-Sol; Yoo, Jejoong; Paek, Eunok; Noh, Yung-Kyun; Joo, Keehyoung.
-
Conformational changes in the human Cx43/GJA1 gap junction channel visualized using cryo-EM. Nature Communications 14(1) 931, 2023.
Lee, Hyuk-Joon; Cha, Hyung Jin; Jeong, Hyeongseop; Lee, Seu-Na; Lee, Chang-Won; Kim, Minsoo; Yoo, Jejoong; Woo, Jae-Sung.
-
Cryo-EM structures of human Cx36/GJD2 neuronal gap junction channel. Nature Communications 14(1) 1347, 2023.
Lee, Seu-Na; Cho, Hwa-Jin; Jeong, Hyeongseop; Ryu, Bumhan; Lee, Hyuk-Joon; Kim, Minsoo; Yoo, Jejoong; Woo, Jae-Sung; Lee, Hyung Ho.
-
Single-molecule fingerprinting of protein-drug interaction using a funneled biological nanopore. Nature Communications 14(1) 1461, 2023.
Jeong, Ki-Baek; Ryu, Minju; Kim, Jin-Sik; Kim, Minsoo; Yoo, Jejoong; Chung, Minji; Oh, Sohee; Jo, Gyunghee; Lee, Seong-Gyu; Kim, Ho Min; Lee, Mi-Kyung; Chi, Seung-Wook.
-
Aggregation or phase separation can be induced in highly charged proteins by small charged biomolecules. Soft Matter 18(17) 3313-317, 2022.
Kang, Minchae; Kim, Minsoo; Kim, Min Wook; Shin, Yewon; Yoo, Jejoong; Lee, Sang Hak.
-
Matrix product wave function of the ground state and elementary excitations in the spin-1/2 chain. Physical Review B 103(12) 125157, 2021.
Kim, Jintae; Kim, Minsoo; Padmanabhan, Pramod; Han, Jung Hoon; Lee, Hyun-Yong.
-
Construction of variational matrix product states for the Heisenberg spin-1 chain. Physical Review B 102(8) 085117, 2020.
Kim, Jintae; Kim, Minsoo; Kawashima, Naoki; Han, Jung Hoon; Lee, Hyun-Yong.
Skills
Programming: C, C++, Python, Rust, MPI, CUDA